BEAR Applications

EIGENSOFT 6.1.4-foss-2018b

Unsupported: Use of this version of EIGENSOFT is not supported. More information on our Applications Support and Retention Policy.

There is a newer version of EIGENSOFT

The EIGENSOFT package combines functionality from our population genetics methods (Patterson et al. 2006) and our EIGENSTRAT stratification correction method (Price et al. 2006). The EIGENSTRAT method uses principal components analysis to explicitly model ancestry differences between cases and controls along continuous axes of variation; the resulting correction is specific to a candidate marker's variation in frequency across ancestral populations, minimizing spurious associations while maximizing power to detect true associations. The EIGENSOFT package has a built-in plotting script and supports multiple file formats and quantitative phenotypes.

Accessing EIGENSOFT 6.1.4-foss-2018b

To load the module for EIGENSOFT 6.1.4-foss-2018b please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load bear-apps-unsupported/handbuilt/2019
module load EIGENSOFT/6.1.4-foss-2018b

BEAR Apps Version

2019h

More Information

For more information visit the EIGENSOFT website.

Dependencies

This version of EIGENSOFT has a direct dependency on: foss/2018b Ghostscript/9.23-GCCcore-7.3.0 GSL/2.5-GCC-7.3.0-2.30

Other Versions

These versions of EIGENSOFT are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 3rd June 2019