Unsupported: Use of this version of GATK is not supported. More information on our Applications Support and Retention Policy.The Genome Analysis Toolkit or GATK is a software package developed at the Broad Institute to analyse next-generation resequencing data. The toolkit offers a wide variety of tools, with a primary focus on variant discovery and genotyping as well as strong emphasis on data quality assurance. Its robust architecture, powerful processing engine and high-performance computing features make it capable of taking on projects of any size.
Accessing GATK 3.8-0-Java-1.8
To load the module for GATK 3.8-0-Java-1.8 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load bear-apps-unsupported/handbuilt/2019
module load GATK/3.8-0-Java-1.8
BEAR Apps Version
For more information visit the GATK website.
This version of GATK has a direct dependency on: Java/1.8
This version of GATK is a direct dependent of: HAPDeNovo/fe8bcc2-foss-2018b-Python-3.6.6
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Last modified on 26th July 2019