Unsupported: Use of this version of GATK is not supported. More information on our Applications Support and Retention Policy.The Genome Analysis Toolkit or GATK is a software package developed at the Broad Institute to analyse next-generation resequencing data. The toolkit offers a wide variety of tools, with a primary focus on variant discovery and genotyping as well as strong emphasis on data quality assurance. Its robust architecture, powerful processing engine and high-performance computing features make it capable of taking on projects of any size.
Accessing GATK 18.104.22.168-GCCcore-8.2.0-Java-1.8
To load the module for GATK 22.214.171.124-GCCcore-8.2.0-Java-1.8 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load bear-apps-unsupported/handbuilt/2019
module load GATK/126.96.36.199-GCCcore-8.2.0-Java-1.8
BEAR Apps Version
For more information visit the GATK website.
This version of GATK has a direct dependency on: GCCcore/8.2.0 Java/1.8 Python/2.7.15-GCCcore-8.2.0 Python/3.7.2-GCCcore-8.2.0
This version of GATK is compatible with multiple vesions of Python. At any time, only one of the versions of Python can be active and the desired version of Python should be loaded before loading this version of GATK.
These versions of GATK are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
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Last modified on 17th October 2019