GATK 4.2.0.0-GCCcore-10.2.0-Java-1.8

Unsupported: Use of this version of GATK is not supported. More information on our Applications Support and Retention Policy.

The Genome Analysis Toolkit or GATK is a software package developed at the Broad Institute to analyse next-generation resequencing data. The toolkit offers a wide variety of tools, with a primary focus on variant discovery and genotyping as well as strong emphasis on data quality assurance. Its robust architecture, powerful processing engine and high-performance computing features make it capable of taking on projects of any size.

Accessing GATK 4.2.0.0-GCCcore-10.2.0-Java-1.8

To load the module for GATK 4.2.0.0-GCCcore-10.2.0-Java-1.8 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load bear-apps-unsupported/handbuilt/2019
module load GATK/4.2.0.0-GCCcore-10.2.0-Java-1.8

BEAR Apps Version

2019h

More Information

For more information visit the GATK website.

Dependencies

This version of GATK has a direct dependency on: GCCcore/10.2.0 Java/1.8 Python/3.8.6-GCCcore-10.2.0

Other Versions

These versions of GATK are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 3rd August 2021