Unsupported: Use of this version of GATK is not supported. More information on our Applications Support and Retention Policy.The Genome Analysis Toolkit or GATK is a software package developed at the Broad Institute to analyse next-generation resequencing data. The toolkit offers a wide variety of tools, with a primary focus on variant discovery and genotyping as well as strong emphasis on data quality assurance. Its robust architecture, powerful processing engine and high-performance computing features make it capable of taking on projects of any size.
Accessing GATK 18.104.22.168-GCCcore-10.2.0-Java-11
To load the module for GATK 22.214.171.124-GCCcore-10.2.0-Java-11 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load bear-apps-unsupported/handbuilt/2019
module load GATK/126.96.36.199-GCCcore-10.2.0-Java-11
BEAR Apps Version
For more information visit the GATK website.
This version of GATK has a direct dependency on: GCCcore/10.2.0 Java/11 Python/3.8.6-GCCcore-10.2.0
These versions of GATK are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
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Last modified on 3rd August 2021