HAPDeNovo fe8bcc2-foss-2018b-Python-3.6.6

Unsupported: Use of this version of HAPDeNovo is not supported. More information on our Applications Support and Retention Policy.

HAPDeNovo is a software package to detect de novo mutations on barcoded linked read sequencing. We identified the major source of de novo mutation from NGS data was caused by the biased haplotype coverage. HAPDeNovo can eliminate more than 99% false positive de novo calls with the help of 10X linked read sequencing.

Accessing HAPDeNovo fe8bcc2-foss-2018b-Python-3.6.6

To load the module for HAPDeNovo fe8bcc2-foss-2018b-Python-3.6.6 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load bear-apps-unsupported/handbuilt/2019
module load HAPDeNovo/fe8bcc2-foss-2018b-Python-3.6.6

BEAR Apps Version

2019h

More Information

For more information visit the HAPDeNovo website.

Dependencies

This version of HAPDeNovo has a direct dependency on: DeNovoGear/387354d-foss-2018b foss/2018b FreeBayes/1.2.0-foss-2018b GATK/3.8-0-Java-1.8 LongRanger/2.2.2 Python/3.6.6-foss-2018b SAMtools/1.9-foss-2018b tabix/0.2.6-GCCcore-7.3.0 Triodenovo/0.06-foss-2018b VCFtools/0.1.16-foss-2018b-Perl-5.28.0

Last modified on 26th July 2019