HiCUP 0.8.3-foss-2021a

Unsupported: Use of this version of HiCUP is not supported. More information on our Applications Support and Retention Policy.

Hi-C data processing pipeline

Accessing HiCUP 0.8.3-foss-2021a

To load the module for HiCUP 0.8.3-foss-2021a please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load bear-apps-unsupported/handbuilt/2019
module load HiCUP/0.8.3-foss-2021a

BEAR Apps Version

2019h

More Information

For more information visit the HiCUP website.

Dependencies

This version of HiCUP has a direct dependency on: Bowtie2/2.4.4-GCC-10.3.0 foss/2021a gzip/1.10-GCCcore-10.3.0 Perl/5.32.1-GCCcore-10.3.0 R/4.1.0-foss-2021a SAMtools/1.12-GCC-10.3.0

Last modified on 2nd February 2022