Unsupported: Use of this version of OptiType is not supported. More information on our Applications Support and Retention Policy.
There is a newer version of OptiTypeOptiType is a novel HLA genotyping algorithm based on integer linear programming, capable of producing accurate 4-digit HLA genotyping predictions from NGS data by simultaneously selecting all major and minor HLA Class I alleles.
Accessing OptiType 1.3.2-foss-2018b-Python-2.7.15
To load the module for OptiType 1.3.2-foss-2018b-Python-2.7.15 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load bear-apps-unsupported/handbuilt/2019
module load OptiType/1.3.2-foss-2018b-Python-2.7.15
BEAR Apps Version
For more information visit the OptiType website.
This version of OptiType has a direct dependency on: foss/2018b future/0.16.0-foss-2018b-Python-2.7.15 GLPK/4.65-GCCcore-7.3.0 HDF5/1.10.2-foss-2018b matplotlib/2.2.3-foss-2018b-Python-2.7.15 Pyomo/5.5.0-foss-2018b-Python-2.7.15 Pysam/0.15.1-foss-2018b-Python-2.7.15 PyTables/3.4.4-foss-2018b-Python-2.7.15 Python/2.7.15-foss-2018b SAMtools/1.9-foss-2018b SeqAn/2.4.0-foss-2018b
These versions of OptiType are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
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Last modified on 7th June 2019