Unsupported: Use of this version of OptiType is not supported. More information on our Applications Support and Retention Policy.OptiType is a novel HLA genotyping algorithm based on integer linear programming, capable of producing accurate 4-digit HLA genotyping predictions from NGS data by simultaneously selecting all major and minor HLA Class I alleles.
Accessing OptiType 1.3.2-foss-2018b-Python-3.6.6
To load the module for OptiType 1.3.2-foss-2018b-Python-3.6.6 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load bear-apps-unsupported/handbuilt/2019
module load OptiType/1.3.2-foss-2018b-Python-3.6.6
BEAR Apps Version
For more information visit the OptiType website.
This version of OptiType has a direct dependency on: foss/2018b future/0.16.0-foss-2018b-Python-3.6.6 GLPK/4.65-GCCcore-7.3.0 HDF5/1.10.2-foss-2018b matplotlib/3.0.0-foss-2018b-Python-3.6.6 Pyomo/5.5.0-foss-2018b-Python-3.6.6 Pysam/0.15.1-foss-2018b-Python-3.6.6 PyTables/3.4.4-foss-2018b-Python-3.6.6 Python/3.6.6-foss-2018b SAMtools/1.9-foss-2018b SeqAn/2.4.0-foss-2018b
These versions of OptiType are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
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Last modified on 5th June 2019