PASApipeline 2.4.1-foss-2019b

Unsupported: Use of this version of PASApipeline is not supported. More information on our Applications Support and Retention Policy.

PASA, acronym for Program to Assemble Spliced Alignments (and pronounced 'pass-uh'), is a eukaryotic genome annotation tool that exploits spliced alignments of expressed transcript sequences to automatically model gene structures, and to maintain gene structure annotation consistent with the most recently available experimental sequence data. PASA also identifies and classifies all splicing variations supported by the transcript alignments.

Accessing PASApipeline 2.4.1-foss-2019b

To load the module for PASApipeline 2.4.1-foss-2019b please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load bear-apps-unsupported/handbuilt/2019
module load PASApipeline/2.4.1-foss-2019b

BEAR Apps Version

2019h

More Information

For more information visit the PASApipeline website.

Dependencies

This version of PASApipeline has a direct dependency on: FASTA/36.3.8h_04-May-2020-foss-2019b foss/2019b GMAP-GSNAP/2020-09-12-foss-2019b Kent_tools/401-foss-2019b Perl/5.30.0-GCCcore-8.3.0 SQLite/3.29.0-GCCcore-8.3.0

Required By

This version of PASApipeline is a direct dependent of: funannotate/1.8.1-foss-2019b-Python-2.7.16 funannotate/1.8.1-foss-2019b-Python-3.7.4

Last modified on 12th October 2020