RagTag 2.1.0-foss-2022a

Unsupported: Use of this version of RagTag is not supported. More information on our Applications Support and Retention Policy.

RagTag is a collection of software tools for scaffolding and improving modern genome assemblies. Tasks include: homology-based misassembly correction, homology-based assembly scaffolding and patching, and scaffold merging. RagTag also provides command line utilities for working with common genome assembly file formats.

Accessing RagTag 2.1.0-foss-2022a

To load the module for RagTag 2.1.0-foss-2022a please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load bear-apps-unsupported/handbuilt/2019
module load RagTag/2.1.0-foss-2022a

BEAR Apps Version

2019h

More Information

For more information visit the RagTag website.

Dependencies

This version of RagTag has a direct dependency on: foss/2022a minimap2/2.24-GCCcore-11.3.0 MUMmer/4.0.0rc1-GCCcore-11.3.0 networkx/2.8.4-foss-2022a Pysam/0.19.1-GCC-11.3.0 Python/3.10.4-GCCcore-11.3.0 SciPy-bundle/2022.05-foss-2022a unimap/0.1-GCCcore-11.3.0

Last modified on 27th October 2023