SAMtools 1.9-foss-2018b

Unsupported: Use of this version of SAMtools is not supported. More information on our Applications Support and Retention Policy.

There is a newer version of SAMtools

SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format.

Accessing SAMtools 1.9-foss-2018b

To load the module for SAMtools 1.9-foss-2018b please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load bear-apps-unsupported/handbuilt/2019
module load SAMtools/1.9-foss-2018b

BEAR Apps Version


More Information

For more information visit the SAMtools website.


This version of SAMtools has a direct dependency on: bzip2/1.0.6-GCCcore-7.3.0 foss/2018b ncurses/6.1-GCCcore-7.3.0 XZ/5.2.4-GCCcore-7.3.0 zlib/1.2.11-GCCcore-7.3.0

Required By

This version of SAMtools is a direct dependent of: AUGUSTUS/3.3.2-foss-2018b-Python-2.7.15 bam-readcount/0.8.0-foss-2018b HAPDeNovo/fe8bcc2-foss-2018b-Python-3.6.6 OptiType/1.3.2-foss-2018b-Python-3.6.6 OptiType/1.3.2-foss-2018b-Python-2.7.15 TraCeR/0.6.0-foss-2018b-Python-3.6.6 TRAPeS/e65bb7b-foss-2018b-Python-2.7.15

Other Versions

These versions of SAMtools are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 3rd June 2019