Scipion 3.0.12-foss-2021a-CUDA-11.3.1

Unsupported: Use of this version of Scipion is not supported. More information on our Applications Support and Retention Policy.

Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM). It integrates several software packages and presents an unified interface for both biologists and developers. Scipion allows to execute workflows combining different software tools, while taking care of formats and conversions. Additionally, all steps are tracked and can be reproduced later on.

Accessing Scipion 3.0.12-foss-2021a-CUDA-11.3.1

To load the module for Scipion 3.0.12-foss-2021a-CUDA-11.3.1 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load bear-apps-unsupported/handbuilt/2019
module load Scipion/3.0.12-foss-2021a-CUDA-11.3.1

BEAR Apps Version

2019h

Extensions

  • biopython 1.76
  • configparser 5.0.2
  • emtable 0.0.14
  • littleutils 0.2.2
  • outdated 0.2.2
  • peppercorn 0.6
  • plotter 1.3.19
  • PyWavelets 1.4.1
  • scipion-app-3.0.12
  • scipion-em-3.0.23
  • scipion-em-gctf-3.1.1
  • scipion-em-xmipp-22.7.0
  • scipion-pyworkflow-3.0.27
  • tifffile 2022.10.10
  • tikzplotlib 0.10.1
  • tkcolorpicker 2.1.3
  • webcolors 1.12

More Information

For more information visit the Scipion website.

Dependencies

This version of Scipion has a direct dependency on: bibtexparser/1.4.0-GCCcore-10.3.0 ctffind/4.1.14-foss-2021a-CUDA-11.3.1 CUDA/11.3.1 foss/2021a freetype/2.10.4-GCCcore-10.3.0 GSL/2.7-GCC-10.3.0 HDF5/1.10.7-gompi-2021a Java/11 libjpeg-turbo/2.0.6-GCCcore-10.3.0 libpng/1.6.37-GCCcore-10.3.0 libreadline/8.1-GCCcore-10.3.0 LibTIFF/4.2.0-GCCcore-10.3.0 libxml2/2.9.10-GCCcore-10.3.0 libxslt/1.1.34-GCCcore-10.3.0 matplotlib/3.4.2-foss-2021a MotionCor2/1.4.7-GCCcore-10.3.0-CUDA-11.3.1 OpenCV/4.5.3-foss-2021a-CUDA-11.3.1-contrib Pillow/8.2.0-GCCcore-10.3.0 Python/3.9.5-GCCcore-10.3.0 RELION/3.1.3-foss-2021a-CUDA-11.3.1 scikit-learn/0.24.2-foss-2021a SQLite/3.35.4-GCCcore-10.3.0 Tcl/8.6.11-GCCcore-10.3.0 Tk/8.6.11-GCCcore-10.3.0 Xmipp/3.22.07-Helios-foss-2021a-CUDA-11.3.1 zlib/1.2.11-GCCcore-10.3.0

Last modified on 1st December 2022