Scrublet 0.2.1-foss-2019b-Python-3.7.4

Unsupported: Use of this version of Scrublet is not supported. More information on our Applications Support and Retention Policy.

Single-Cell Remover of Doublets. Python code for identifying doublets in single-cell RNA-seq data.

Accessing Scrublet 0.2.1-foss-2019b-Python-3.7.4

To load the module for Scrublet 0.2.1-foss-2019b-Python-3.7.4 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load bear-apps-unsupported/handbuilt/2019
module load Scrublet/0.2.1-foss-2019b-Python-3.7.4

BEAR Apps Version

2019h

Extensions

  • annoy 1.17.0
  • llvmlite 0.31.0
  • numba 0.48.0
  • Scrublet 0.2.1
  • umap-learn-0.4.6

More Information

For more information visit the Scrublet website.

Dependencies

This version of Scrublet has a direct dependency on: foss/2019b LLVM/8.0.1-GCCcore-8.3.0 matplotlib/3.1.1-foss-2019b-Python-3.7.4 Python/3.7.4-GCCcore-8.3.0 scikit-image/0.16.2-foss-2019b-Python-3.7.4 scikit-learn/0.21.3-foss-2019b-Python-3.7.4 SciPy-bundle/2019.10-foss-2019b-Python-3.7.4

Last modified on 29th October 2020