Seurat 3.2.0-foss-2019b-R-3.6.2

Unsupported: Use of this version of Seurat is not supported. More information on our Applications Support and Retention Policy.

There is a newer version of Seurat

Seurat is an R package designed for QC, analysis, and exploration of single cell RNA-seq data.

Accessing Seurat 3.2.0-foss-2019b-R-3.6.2

To load the module for Seurat 3.2.0-foss-2019b-R-3.6.2 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load bear-apps-unsupported/handbuilt/2019
module load Seurat/3.2.0-foss-2019b-R-3.6.2

BEAR Apps Version

2019h

Extensions

  • dqrng 0.2.1
  • future 1.17.0
  • future.apply 1.5.0
  • leiden 0.3.3
  • patchwork 1.0.0
  • RcppAnnoy 0.0.16
  • RcppParallel 5.0.1
  • RSpectra-0.16-0
  • rsvd 1.0.3
  • sctransform 0.2.1
  • Seurat 3.2.0
  • sitmo 2.0.1
  • uwot 0.1.8

More Information

For more information visit the Seurat website.

Dependencies

This version of Seurat has a direct dependency on: foss/2019b R/3.6.2-foss-2019b

Required By

This version of Seurat is a direct dependent of: DoubletFinder/20200901-foss-2019b-R-3.6.2 Signac/1.0.0-foss-2019b-R-3.6.2 SoupX/1.4.8-foss-2019b-R-3.6.2

Other Versions

These versions of Seurat are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 5th October 2020