Unsupported: Use of this version of SingCellaR is not supported. More information on our Applications Support and Retention Policy.Description: SingCellaR facilitates standard functionalities necessary for analysis of large and sparse 10x Genomics data, and can be applied to gene expression data sets generated by plate-base protocols such as Smart-Seq2 and TARGET-seq as well as high-throughput droplet-based platforms.
Accessing SingCellaR 1.2.0-foss-2020b-R-4.0.3
To load the module for SingCellaR 1.2.0-foss-2020b-R-4.0.3 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load bear-apps-unsupported/handbuilt/2019
module load SingCellaR/1.2.0-foss-2020b-R-4.0.3
BEAR Apps Version
- AUCell 1.12.0
- cccd 1.5
- crochet 2.3.0
- LinkedMatrix 1.4.0
- SingCellaR 1.2.0
For more information visit the SingCellaR website.
This version of SingCellaR has a direct dependency on: foss/2020b R/4.0.3-foss-2020b R-bundle-Bioconductor/3.12-foss-2020b-R-4.0.3
Last modified on 13th August 2021