SoupX 1.4.8-foss-2019b-R-3.6.2

Unsupported: Use of this version of SoupX is not supported. More information on our Applications Support and Retention Policy.

Quantify, profile and remove ambient mRNA contamination (the "soup") from droplet based single cell RNA-seq experiments. Implements the method described in Young et al. (2018) .

Accessing SoupX 1.4.8-foss-2019b-R-3.6.2

To load the module for SoupX 1.4.8-foss-2019b-R-3.6.2 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load bear-apps-unsupported/handbuilt/2019
module load SoupX/1.4.8-foss-2019b-R-3.6.2

BEAR Apps Version



  • SoupX 1.4.8

More Information

For more information visit the SoupX website.


This version of SoupX has a direct dependency on: foss/2019b R/3.6.2-foss-2019b Seurat/3.2.0-foss-2019b-R-3.6.2

Last modified on 13th November 2020