BEAR Applications

SquiggleKit 1.0.0-foss-2018b-Python-2.7.15

Unsupported: Use of this version of SquiggleKit is not supported. More information on our Applications Support and Retention Policy.

There is a newer version of SquiggleKit

A toolkit for accessing and manipulating nanopore signal data

Accessing SquiggleKit 1.0.0-foss-2018b-Python-2.7.15

To load the module for SquiggleKit 1.0.0-foss-2018b-Python-2.7.15 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load bear-apps-unsupported/handbuilt/2019
module load SquiggleKit/1.0.0-foss-2018b-Python-2.7.15

BEAR Apps Version

2019h

More Information

For more information visit the SquiggleKit website.

Dependencies

This version of SquiggleKit has a direct dependency on: foss/2018b h5py/2.8.0-foss-2018b-Python-2.7.15 matplotlib/2.2.3-foss-2018b-Python-2.7.15 mlpy/3.5.0-foss-2018b-Python-2.7.15 Python/2.7.15-foss-2018b scikit-learn/0.20.0-foss-2018b-Python-2.7.15

Other Versions

These versions of SquiggleKit are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 19th June 2019