SquiggleKit 4a8abb5-foss-2019b-Python-2.7.16

Unsupported: Use of this version of SquiggleKit is not supported. More information on our Applications Support and Retention Policy.

A toolkit for accessing and manipulating nanopore signal data

Accessing SquiggleKit 4a8abb5-foss-2019b-Python-2.7.16

To load the module for SquiggleKit 4a8abb5-foss-2019b-Python-2.7.16 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load bear-apps-unsupported/handbuilt/2019
module load SquiggleKit/4a8abb5-foss-2019b-Python-2.7.16

BEAR Apps Version


More Information

For more information visit the SquiggleKit website.


This version of SquiggleKit has a direct dependency on: foss/2019b h5py/2.10.0-foss-2019b-Python-2.7.16 matplotlib/2.2.5-foss-2019b-Python-2.7.16 mlpy/3.5.0-foss-2019b-Python-2.7.16 ont-fast5-api/2.0.1-foss-2019b-Python-2.7.16 Python/2.7.16-GCCcore-8.3.0 scikit-learn/0.20.4-foss-2019b-Python-2.7.16 Scrappie/1.4.1-foss-2019b-Python-2.7.16

Other Versions

These versions of SquiggleKit are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Version BEAR Apps Version
1.0.0-foss-2018b-Python-2.7.15 2018b

Last modified on 28th July 2020