Unsupported: Use of this version of amplimap is not supported. More information on our Applications Support and Retention Policy.amplimap is a command-line tool to automate the processing and analysis of data from targeted next-generation sequencing (NGS) experiments with PCR-based amplicons or capture-based enrichment systems.
Accessing amplimap 0.4.16-foss-2018b-Python-3.6.6
To load the module for amplimap 0.4.16-foss-2018b-Python-3.6.6 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load bear-apps-unsupported/handbuilt/2019
module load amplimap/0.4.16-foss-2018b-Python-3.6.6
BEAR Apps Version
- amplimap 0.4.16
- Distance 0.1.3
- future 0.17.1
- interlap 0.2.6
- pyfaidx 0.5.5.2
- pysam 0.13
- regex 2019.01.24
- umi_tools 0.5.5
For more information visit the amplimap website.
This version of amplimap has a direct dependency on: Biopython/1.72-foss-2018b-Python-3.6.6 cURL/7.60.0-GCCcore-7.3.0 foss/2018b matplotlib/3.0.0-foss-2018b-Python-3.6.6 ncurses/6.1-GCCcore-7.3.0 Python/3.6.6-foss-2018b PyYAML/3.13-foss-2018b-Python-3.6.6 snakemake/5.2.4-foss-2018b-Python-3.6.6
These versions of amplimap are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
|Version||BEAR Apps Version|
Last modified on 19th February 2021