ecc_finder 1.0.0_20221007_67d06f3-foss-2021b

Unsupported: Use of this version of ecc_finder is not supported. More information on our Applications Support and Retention Policy.

A robust and accurate detection tool to detect eccDNA using Illumina and ONT sequencing

Accessing ecc_finder 1.0.0_20221007_67d06f3-foss-2021b

To load the module for ecc_finder 1.0.0_20221007_67d06f3-foss-2021b please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load bear-apps-unsupported/handbuilt/2019
module load ecc_finder/1.0.0_20221007_67d06f3-foss-2021b

BEAR Apps Version

2019h

More Information

For more information visit the ecc_finder website.

Dependencies

This version of ecc_finder has a direct dependency on: Biopython/1.79-foss-2021b BWA/0.7.17-GCCcore-11.2.0 CD-HIT/4.8.1-GCC-11.2.0 fastp/0.23.2-GCC-11.2.0 foss/2021b Genrich/0.6.1-GCC-11.2.0 matplotlib/3.4.3-foss-2021b minimap2/2.24-GCCcore-11.2.0 pybedtools/0.8.2-GCC-11.2.0 Pysam/0.17.0-GCC-11.2.0 Python/3.9.6-GCCcore-11.2.0 SciPy-bundle/2021.10-foss-2021b seqtk/1.3-GCC-11.2.0 TideHunter/1.5.4-GCC-11.2.0 Unicycler/0.5.0-gompi-2021b

Last modified on 11th October 2022