gffutils 0.9-foss-2018b-Python-2.7.15

Unsupported: Use of this version of gffutils is not supported. More information on our Applications Support and Retention Policy.

gffutils is a Python package for working with GFF and GTF files in a hierarchical manner. It allows operations which would be complicated or time-consuming using a text-file-only approach.

Accessing gffutils 0.9-foss-2018b-Python-2.7.15

To load the module for gffutils 0.9-foss-2018b-Python-2.7.15 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load bear-apps-unsupported/handbuilt/2019
module load gffutils/0.9-foss-2018b-Python-2.7.15

BEAR Apps Version

2019h

Extensions

  • gffutils 0.9
  • pyfaidx 0.5.5.2
  • simplejson 3.16.0

More Information

For more information visit the gffutils website.

Dependencies

This version of gffutils has a direct dependency on: Biopython/1.72-foss-2018b-Python-2.7.15 foss/2018b Python/2.7.15-foss-2018b

Required By

This version of gffutils is a direct dependent of: rnaQUAST/1.5.1-foss-2018b-Python-2.7.15

Last modified on 4th June 2019