minimap2 2.17-GCC-8.3.0

Unsupported: Use of this version of minimap2 is not supported. More information on our Applications Support and Retention Policy.

There is a newer version of minimap2

Minimap2 is a fast sequence mapping and alignment program that can find overlaps between long noisy reads, or map long reads or their assemblies to a reference genome optionally with detailed alignment (i.e. CIGAR). At present, it works efficiently with query sequences from a few kilobases to ~100 megabases in length at an error rate ~15%. Minimap2 outputs in the PAF or the SAM format. On limited test data sets, minimap2 is over 20 times faster than most other long-read aligners. It will replace BWA-MEM for long reads and contig alignment.

Accessing minimap2 2.17-GCC-8.3.0

To load the module for minimap2 2.17-GCC-8.3.0 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load bear-apps-unsupported/handbuilt/2019
module load minimap2/2.17-GCC-8.3.0

BEAR Apps Version

2019h

More Information

For more information visit the minimap2 website.

Dependencies

This version of minimap2 has a direct dependency on: GCC/8.3.0

Required By

This version of minimap2 is a direct dependent of: funannotate/1.8.1-foss-2019b-Python-2.7.16 funannotate/1.8.1-foss-2019b-Python-3.7.4 Liftoff/1.4.2-foss-2019b-Python-3.7.4

Other Versions

These versions of minimap2 are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 7th September 2020