Unsupported: Use of this version of scanpy is not supported. More information on our Applications Support and Retention Policy.
There is a newer version of scanpyScanpy is a scalable toolkit for analyzing single-cell gene expression data built jointly with anndata. It includes preprocessing, visualization, clustering, trajectory inference and differential expression testing. The Python-based implementation efficiently deals with datasets of more than one million cells.
Accessing scanpy 1.8.1-foss-2021a
To load the module for scanpy 1.8.1-foss-2021a please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load bear-apps-unsupported/handbuilt/2019
module load scanpy/1.8.1-foss-2021a
BEAR Apps Version
- anndata 0.7.6
- natsort 7.1.1
- pynndescent 0.5.4
- scanpy 1.8.1
- sinfo 0.3.4
- xlrd 1.2.0
For more information visit the scanpy website.
This version of scanpy has a direct dependency on: foss/2021a h5py/3.2.1-foss-2021a leidenalg/0.8.7-foss-2021a networkx/2.5.1-foss-2021a numba/0.53.1-foss-2021a PyTables/3.6.1-foss-2021a Python/3.9.5-GCCcore-10.3.0 scikit-learn/0.24.2-foss-2021a SciPy-bundle/2021.05-foss-2021a Seaborn/0.11.2-foss-2021a statsmodels/0.12.2-foss-2021a tqdm/4.61.2-GCCcore-10.3.0
This version of scanpy is a direct dependent of: scVelo/0.2.4-foss-2021a
These versions of scanpy are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
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Last modified on 20th May 2022