srst2 0.2.0-foss-2018b-Python-2.7.15

Unsupported: Use of this version of srst2 is not supported. More information on our Applications Support and Retention Policy.

Short Read Sequence Typing for Bacterial Pathogens. This program is designed to take Illumina sequence data, a MLST database and/or a database of gene sequences (e.g. resistance genes, virulence genes, etc) and report the presence of STs and/or reference genes.

Accessing srst2 0.2.0-foss-2018b-Python-2.7.15

To load the module for srst2 0.2.0-foss-2018b-Python-2.7.15 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load bear-apps-unsupported/handbuilt/2019
module load srst2/0.2.0-foss-2018b-Python-2.7.15

BEAR Apps Version


More Information

For more information visit the srst2 website.


This version of srst2 has a direct dependency on: Bowtie2/ foss/2018b Python/2.7.15-foss-2018b SAMtools/0.1.18-foss-2018b

Last modified on 5th June 2019