vcflib 1.0.9-foss-2022a-R-4.2.3

Unsupported: Use of this version of vcflib is not supported. More information on our Applications Support and Retention Policy.

vcflib provides methods to manipulate and interpret sequence variation as it can be described by VCF. The Variant Call Format (VCF) is a flat-file, tab-delimited textual format intended to concisely describe reference-indexed genetic variations between individuals.

Accessing vcflib 1.0.9-foss-2022a-R-4.2.3

To load the module for vcflib 1.0.9-foss-2022a-R-4.2.3 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load bear-apps-unsupported/handbuilt/2019
module load vcflib/1.0.9-foss-2022a-R-4.2.3

BEAR Apps Version

2019h

More Information

For more information visit the vcflib website.

Dependencies

This version of vcflib has a direct dependency on: bzip2/1.0.8-GCCcore-11.3.0 fastahack/1.0.0-GCCcore-11.3.0 filevercmp/20191210-GCCcore-11.3.0 foss/2022a fsom/20151117-GCCcore-11.3.0 HTSlib/1.15.1-GCC-11.3.0 intervaltree/0.1-GCCcore-11.3.0 multichoose/1.0.3-GCCcore-11.3.0 Perl/5.34.1-GCCcore-11.3.0 Python/3.10.4-GCCcore-11.3.0 R/4.2.3-foss-2022a smithwaterman/20160702-GCCcore-11.3.0 tabixpp/1.1.2-GCC-11.3.0 WFA2/2.3.3-GCCcore-11.3.0 XZ/5.2.5-GCCcore-11.3.0 zlib/1.2.12-GCCcore-11.3.0

Required By

This version of vcflib is a direct dependent of: freebayes/1.3.7-foss-2022a-R-4.2.3

Last modified on 3rd November 2023