There is a newer version of BioPerlBioperl is the product of a community effort to produce Perl code which is useful in biology. Examples include Sequence objects, Alignment objects and database searching objects.
Accessing BioPerl 1.7.7-GCCcore-9.3.0
To load the module for BioPerl 1.7.7-GCCcore-9.3.0 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load BioPerl/1.7.7-GCCcore-9.3.0
BEAR Apps Version
EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell
The listed architectures consist of two part: OS-CPU.
- BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
- BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.
- Bio::Procedural 1.7.4
- BioPerl 1.7.7
- XML::DOM::XPath 0.14
- XML::Writer 0.625
For more information visit the BioPerl website.
This version of BioPerl has a direct dependency on: DB_File/1.835-GCCcore-9.3.0 GCCcore/9.3.0 Perl/5.30.2-GCCcore-9.3.0 XML-LibXML/2.0205-GCCcore-9.3.0
This version of BioPerl is a direct dependent of: Mashtree/1.2.0-foss-2020a-Perl-5.30.2 Roary/3.13.0-foss-2020a
These versions of BioPerl are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
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Last modified on 10th November 2020