Bracken 2.6.0-foss-2019b-Python-3.7.4Bracken is a companion program to Kraken 1 or Kraken 2. While Kraken classifies reads to multiple levels in the taxonomic tree, Bracken allows estimation of abundance at a single level using those classifications (e.g. Bracken can estimate abundance of species within a sample).
Accessing Bracken 2.6.0-foss-2019b-Python-3.7.4
To load the module for Bracken 2.6.0-foss-2019b-Python-3.7.4 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load Bracken/2.6.0-foss-2019b-Python-3.7.4
BEAR Apps Version
For more information visit the Bracken website.
This version of Bracken has a direct dependency on: foss/2019b Python/3.7.4-GCCcore-8.3.0
Last modified on 24th June 2020