CellPhoneDB 3.1.0-foss-2020b
CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.Accessing CellPhoneDB 3.1.0-foss-2020b
To load the module for CellPhoneDB 3.1.0-foss-2020b please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load CellPhoneDB/3.1.0-foss-2020b
BEAR Apps Version
Extensions
- aniso8601 8.1.0
- anndata 0.7.5
- boto3 1.16.14
- botocore 1.19.14
- CellPhoneDB 3.1.0
- click 7.1.2
- docutils 0.16
- fbpca 1.0
- Flask 1.1.2
- Flask-RESTful-0.3.8
- Flask-Testing-0.8.1
- geosketch 0.3
- greenlet 0.4.17
- h5py 2.10.0
- idna 2.10
- itsdangerous 1.1.0
- Jinja2 2.11.2
- jmespath 0.10.0
- MarkupSafe 1.1.1
- natsort 7.1.0
- numpy_groupies 0.9.13
- pika 1.2.0
- PyYAML 5.4.1
- requests 2.25.0
- rpy2 3.4.1
- s3transfer 0.3.3
- scikit-learn-0.22
- simplegeneric 0.8.1
- SQLAlchemy 1.3.20
- tzlocal 2.1
- urllib3 1.25.11
- Werkzeug 1.0.1
More Information
For more information visit the CellPhoneDB website.
Dependencies
This version of CellPhoneDB has a direct dependency on: foss/2020b Python/3.8.6-GCCcore-10.2.0 R/4.0.3-foss-2020b SciPy-bundle/2020.11-foss-2020b tqdm/4.56.2-GCCcore-10.2.0
Last modified on 25th January 2023