ChIPseeker 1.28.3-foss-2021a-R-4.1.0

This package implements functions to retrieve the nearest genes around the peak, annotate genomic region of the peak, statstical methods for estimate the significance of overlap among ChIP peak data sets, and incorporate GEO database for user to compare the own dataset with those deposited in database.

Accessing ChIPseeker 1.28.3-foss-2021a-R-4.1.0

To load the module for ChIPseeker 1.28.3-foss-2021a-R-4.1.0 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load ChIPseeker/1.28.3-foss-2021a-R-4.1.0

BEAR Apps Version

2020a

Extensions

  • aplot 0.1.2
  • ChIPseeker 1.28.3
  • DO.db 2.9
  • DOSE 3.18.3
  • enrichplot 1.12.3
  • ggfun 0.0.4
  • ggplotify 0.1.0
  • ggtree 3.0.4
  • GOSemSim 2.18.1
  • gridGraphics-0.5-1
  • scatterpie 0.1.7
  • shadowtext 0.1.1
  • tidytree 0.3.7
  • treeio 1.16.2
  • yulab.utils 0.0.4

More Information

For more information visit the ChIPseeker website.

Dependencies

This version of ChIPseeker has a direct dependency on: foss/2021a R/4.1.0-foss-2021a R-bundle-Bioconductor/3.13-foss-2021a-R-4.1.0

Last modified on 13th January 2022