BEAR Applications

Deepbinner 0.2.0-foss-2018b-Python-3.6.6

There is a newer version of Deepbinner

Deepbinner is a tool for demultiplexing barcoded Oxford Nanopore sequencing reads. It does this with a deep convolutional neural network classifier, using many of the architectural advances that have proven successful in image classification.

Accessing Deepbinner 0.2.0-foss-2018b-Python-3.6.6

To load the module for Deepbinner 0.2.0-foss-2018b-Python-3.6.6 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load Deepbinner/0.2.0-foss-2018b-Python-3.6.6

BEAR Apps Version

2020a

Extensions

• Deepbinner 0.2.0

More Information

For more information visit the Deepbinner website.

Dependencies

This version of Deepbinner has a direct dependency on: foss/2018b h5py/2.8.0-foss-2018b-Python-3.6.6 HDF5/1.10.2-foss-2018b Keras/2.2.4-foss-2018b-Python-3.6.6 Python/3.6.6-foss-2018b wheel/0.31.1-foss-2018b-Python-3.6.6

Other Versions

These versions of Deepbinner are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 3rd June 2019