GATK 184.108.40.206-foss-2018b-Python-3.6.6The Genome Analysis Toolkit or GATK is a software package developed at the Broad Institute to analyse next-generation resequencing data. The toolkit offers a wide variety of tools, with a primary focus on variant discovery and genotyping as well as strong emphasis on data quality assurance. Its robust architecture, powerful processing engine and high-performance computing features make it capable of taking on projects of any size.
Accessing GATK 220.127.116.11-foss-2018b-Python-3.6.6
To load the module for GATK 18.104.22.168-foss-2018b-Python-3.6.6 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load GATK/22.214.171.124-foss-2018b-Python-3.6.6
BEAR Apps Version
For more information visit the GATK website.
This version of GATK has a direct dependency on: foss/2018b Java/1.8 Python/3.6.6-foss-2018b
These versions of GATK are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
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Last modified on 4th June 2019