GeomxTools 1.0.0-foss-2021a-R-4.1.0

Tools for NanoString Technologies GeoMx Technology. Package provides functions for reading in DCC and PKC files based on an ExpressionSet derived object. Normalization and QC functions are also included.

Accessing GeomxTools 1.0.0-foss-2021a-R-4.1.0

To load the module for GeomxTools 1.0.0-foss-2021a-R-4.1.0 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load GeomxTools/1.0.0-foss-2021a-R-4.1.0

BEAR Apps Version

2020a

Extensions

  • GeomxTools 1.0.0
  • ggiraph 0.7.10
  • NanoStringNCTools 1.0.0
  • systemfonts 1.0.4

More Information

For more information visit the GeomxTools website.

Dependencies

This version of GeomxTools has a direct dependency on: foss/2021a R/4.1.0-foss-2021a R-bundle-Bioconductor/3.13-foss-2021a-R-4.1.0

Required By

This version of GeomxTools is a direct dependent of: BEAR-R-bio/2021a-foss-2021a-R-4.1.0

Last modified on 29th March 2022