MMSplice 1.0.3-foss-2019a-Python-3.7.2

Variant effect predictions on splicing

Accessing MMSplice 1.0.3-foss-2019a-Python-3.7.2

To load the module for MMSplice 1.0.3-foss-2019a-Python-3.7.2 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load MMSplice/1.0.3-foss-2019a-Python-3.7.2

BEAR Apps Version

2020a

Extensions

  • argcomplete 1.11.1
  • argh 0.26.2
  • arrow 0.15.5
  • binaryornot 0.4.4
  • colorlog 4.1.0
  • concise 0.6.8
  • cookiecutter 1.7.0
  • deprecation 2.0.7
  • descartes 1.1.0
  • gffutils 0.10.1
  • gtfparse 1.2.0
  • importlib_metadata 1.5.0
  • jinja2-time-0.2.0
  • kipoi 0.6.25
  • kipoi_conda 0.2.2
  • kipoi_utils 0.3.8
  • kipoiseq 0.2.7
  • MMSplice 1.0.3
  • natsort 7.0.1
  • ncls 0.0.53
  • poyo 0.5.0
  • pyfaidx 0.5.8
  • pyranges 0.0.76
  • pyrle 0.0.30
  • related 0.7.2
  • related 0.7.2
  • scikit-learn-0.19.2
  • Shapely 1.7.0
  • simplejson 3.17.0
  • sorted_nearest 0.0.31
  • tinydb 3.15.2
  • whichcraft 0.6.1
  • zipp 0.6.0

More Information

For more information visit the MMSplice website.

Dependencies

This version of MMSplice has a direct dependency on: foss/2019a GEOS/3.7.2-foss-2019a-Python-3.7.2 Keras/2.2.4-foss-2019a-Python-3.7.2 matplotlib/3.0.3-foss-2019a-Python-3.7.2 pybedtools/0.8.0-foss-2019a Pysam/0.15.2-foss-2019a Python/3.7.2-GCCcore-8.2.0 tqdm/4.33.0-foss-2019a-Python-3.7.2

Last modified on 16th March 2020