MMSplice 1.0.3-foss-2019a-Python-3.7.2
Variant effect predictions on splicingAccessing MMSplice 1.0.3-foss-2019a-Python-3.7.2
To load the module for MMSplice 1.0.3-foss-2019a-Python-3.7.2 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):
module load MMSplice/1.0.3-foss-2019a-Python-3.7.2
BEAR Apps Version
Extensions
- argcomplete 1.11.1
- argh 0.26.2
- arrow 0.15.5
- binaryornot 0.4.4
- colorlog 4.1.0
- concise 0.6.8
- cookiecutter 1.7.0
- deprecation 2.0.7
- descartes 1.1.0
- gffutils 0.10.1
- gtfparse 1.2.0
- importlib_metadata 1.5.0
- jinja2-time-0.2.0
- kipoi 0.6.25
- kipoi_conda 0.2.2
- kipoi_utils 0.3.8
- kipoiseq 0.2.7
- MMSplice 1.0.3
- natsort 7.0.1
- ncls 0.0.53
- poyo 0.5.0
- pyfaidx 0.5.8
- pyranges 0.0.76
- pyrle 0.0.30
- related 0.7.2
- related 0.7.2
- scikit-learn-0.19.2
- Shapely 1.7.0
- simplejson 3.17.0
- sorted_nearest 0.0.31
- tinydb 3.15.2
- whichcraft 0.6.1
- zipp 0.6.0
More Information
For more information visit the MMSplice website.
Dependencies
This version of MMSplice has a direct dependency on: foss/2019a GEOS/3.7.2-foss-2019a-Python-3.7.2 Keras/2.2.4-foss-2019a-Python-3.7.2 matplotlib/3.0.3-foss-2019a-Python-3.7.2 pybedtools/0.8.0-foss-2019a Pysam/0.15.2-foss-2019a Python/3.7.2-GCCcore-8.2.0 tqdm/4.33.0-foss-2019a-Python-3.7.2
Last modified on 16th March 2020