MSIsensor 0.6-GCCcore-10.3.0

MSIsensor is a C++ program to detect replication slippage variants at microsatellite regions, and differentiate them as somatic or germline. Given paired tumor and normal sequence data, it builds a distribution for expected (normal) and observed (tumor) lengths of repeated sequence per microsatellite, and compares them using Pearson's Chi-Squared Test.

Accessing MSIsensor 0.6-GCCcore-10.3.0

To load the module for MSIsensor 0.6-GCCcore-10.3.0 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load MSIsensor/0.6-GCCcore-10.3.0

BEAR Apps Version

2020a

More Information

For more information visit the MSIsensor website.

Dependencies

This version of MSIsensor has a direct dependency on: GCCcore/10.3.0 ncurses/6.2-GCCcore-10.3.0 zlib/1.2.11-GCCcore-10.3.0

Last modified on 31st May 2022