Megalodon 2.4.2-foss-2021a

Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the information rich basecalling neural network output to a reference genome/transriptome.

Accessing Megalodon 2.4.2-foss-2021a

To load the module for Megalodon 2.4.2-foss-2021a please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load Megalodon/2.4.2-foss-2021a

BEAR Apps Version

2020a

Extensions

  • mappy 2.24
  • megalodon 2.4.2
  • ont-fast5-api-4.0.0
  • ont_pyguppy_client_lib 6.0.1
  • progressbar33 2.4

More Information

For more information visit the Megalodon website.

Dependencies

This version of Megalodon has a direct dependency on: foss/2021a h5py/3.2.1-foss-2021a Pysam/0.16.0.1-GCC-10.3.0 Python/3.9.5-GCCcore-10.3.0 Remora/0.1.2-foss-2021a scikit-learn/0.24.2-foss-2021a SciPy-bundle/2021.05-foss-2021a Seaborn/0.11.2-foss-2021a tqdm/4.61.2-GCCcore-10.3.0

Last modified on 10th February 2022