OncoSNP-Seq 2.01

OncoSNP-SEQ is an analytical tool for characterising copy number alterations and loss-of-heterozygosity (LOH) events in cancer samples from whole genome sequencing data.

Accessing OncoSNP-Seq 2.01

To load the module for OncoSNP-Seq 2.01 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load OncoSNP-Seq/2.01

BEAR Apps Version

2020a

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

Using OncoSNP-Seq

To run this application, issue the following command:

run_oncoseq.sh ${MCRROOT} [options]

More Information

For more information visit the OncoSNP-Seq website.

Dependencies

This version of OncoSNP-Seq has a direct dependency on: MCR/R2013b

Last modified on 20th May 2019