PyImageJ 1.3.1-foss-2021a

PyImageJ provides a set of wrapper functions for integration between ImageJ2 and Python. It also supports the original ImageJ API and data structures. A major advantage of this approach is the ability to combine ImageJ and ImageJ2 with other tools available from the Python software ecosystem, including NumPy, SciPy, scikit-image, CellProfiler, OpenCV, ITK and many more.

Accessing PyImageJ 1.3.1-foss-2021a

To load the module for PyImageJ 1.3.1-foss-2021a please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load PyImageJ/1.3.1-foss-2021a

BEAR Apps Version



  • imglyb 2.0.1
  • jgo 1.0.5
  • JPype1 1.4.1
  • labeling 0.1.13
  • PyImageJ 1.3.1
  • scyjava 1.8.1
  • setuptools 61.3.1

More Information

For more information visit the PyImageJ website.


This version of PyImageJ has a direct dependency on: foss/2021a Java/11 matplotlib/3.4.2-foss-2021a Maven/3.6.3 Pillow/8.2.0-GCCcore-10.3.0 Python/3.9.5-GCCcore-10.3.0 scikit-image/0.18.3-foss-2021a SciPy-bundle/2021.05-foss-2021a xarray/0.19.0-foss-2021a

Last modified on 29th November 2022