RcisTarget 1.8.0-foss-2020a-R-4.0.0
RcisTarget identifies transcription factor binding motifs (TFBS) over-represented on a gene list. In a first step, RcisTarget selects DNA motifs that are significantly over-represented in the surroundings of the transcription start site (TSS) of the genes in the gene-set. This is achieved by using a database that contains genome-wide cross-species rankings for each motif. The motifs that are then annotated to TFs and those that have a high Normalized Enrichment Score (NES) are retained. Finally, for each motif and gene-set, RcisTarget predicts the candidate target genes (i.e. genes in the gene-set that are ranked above the leading edge).Accessing RcisTarget 1.8.0-foss-2020a-R-4.0.0
To load the module for RcisTarget 1.8.0-foss-2020a-R-4.0.0 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):
📋
module load RcisTarget/1.8.0-foss-2020a-R-4.0.0
BEAR Apps Version
Architectures
EL8-cascadelake — EL8-icelake — EL8-sapphirerapids
The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
Extensions
- AUCell 1.10.0
- RcisTarget 1.8.0
More Information
For more information visit the RcisTarget website.
Dependencies
This version of RcisTarget has a direct dependency on: foss/2020a R/4.0.0-foss-2020a R-bundle-Bioconductor/3.11-foss-2020a-R-4.0.0
Last modified on 12th January 2021