BEAR Applications: SAMtools 0.1.20-foss-2018b (for BlueBEAR, BEARCloud VMs, and CaStLeS VMs)

SAMtools 0.1.20-foss-2018b

There is a newer version of SAMtools

SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format.

Accessing SAMtools 0.1.20-foss-2018b

To load the module for SAMtools 0.1.20-foss-2018b please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load SAMtools/0.1.20-foss-2018b

BEAR Apps Version

2020a

More Information

For more information visit the SAMtools website.

Dependencies

This version of SAMtools has a direct dependency on: foss/2018b ncurses/6.1-GCCcore-7.3.0 zlib/1.2.11-GCCcore-7.3.0

Other Versions

These versions of SAMtools are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Version	BEAR Apps Version
1.15.1-GCC-11.2.0	2021b
1.12-GCC-10.3.0	2021a
1.11-GCC-10.2.0	2020b
1.10-GCC-9.3.0	2020a
1.10-GCC-8.3.0	2019b
0.1.19-GCC-10.3.0	2021a
1.9-GCC-8.2.0-2.31.1	2019a
1.9-foss-2018b	2018b
0.1.18-foss-2018b	2018b

Last modified on 3rd June 2019