deepTools 3.5.0-foss-2020a-Python-3.8.2

deepTools is a suite of python tools particularly developed for the efficient analysis of high-throughput sequencing data, such as ChIP-seq, RNA-seq or MNase-seq.

Accessing deepTools 3.5.0-foss-2020a-Python-3.8.2

To load the module for deepTools 3.5.0-foss-2020a-Python-3.8.2 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load deepTools/3.5.0-foss-2020a-Python-3.8.2

BEAR Apps Version

2020a

Architectures

EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

Extensions

  • deepTools 3.5.0
  • deeptoolsintervals 0.1.9
  • numpydoc 1.1.0
  • py2bit 0.3.0
  • pyBigWig 0.3.17

More Information

For more information visit the deepTools website.

Dependencies

This version of deepTools has a direct dependency on: foss/2020a matplotlib/3.2.1-foss-2020a-Python-3.8.2 plotly.py/4.8.1-GCCcore-9.3.0 Pysam/0.16.0.1-GCC-9.3.0 Python/3.8.2-GCCcore-9.3.0

Required By

This version of deepTools is a direct dependent of: RGT/0.13.2-foss-2020a-Python-3.8.2

Last modified on 3rd December 2020