gambin 2.4.4-foss-2020a-R-4.0.0

Fits unimodal and multimodal gambin distributions to species-abundance distributions from ecological data. 'gambin' is short for 'gamma-binomial'. The main function is fit_abundances(), which estimates the 'alpha' parameter(s) of the gambin distribution using maximum likelihood. Functions are also provided to generate the gambin distribution and for calculating likelihood statistics.

Accessing gambin 2.4.4-foss-2020a-R-4.0.0

To load the module for gambin 2.4.4-foss-2020a-R-4.0.0 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load gambin/2.4.4-foss-2020a-R-4.0.0

BEAR Apps Version

2020a

Architectures

EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

Extensions

  • gambin 2.4.4

More Information

For more information visit the gambin website.

Dependencies

This version of gambin has a direct dependency on: foss/2020a R/4.0.0-foss-2020a

Last modified on 6th October 2020