BEAR Applications

kallisto 0.46.1-foss-2019b

kallisto is a program for quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads.

Accessing kallisto 0.46.1-foss-2019b

To load the module for kallisto 0.46.1-foss-2019b please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load kallisto/0.46.1-foss-2019b

BEAR Apps Version

2020a

More Information

For more information visit the kallisto website.

Dependencies

This version of kallisto has a direct dependency on: foss/2019b HDF5/1.10.5-gompi-2019b

Required By

This version of kallisto is a direct dependent of: funannotate/1.8.1-foss-2019b-Python-2.7.16 funannotate/1.8.1-foss-2019b-Python-3.7.4 Trinity/2.9.1-foss-2019b-Python-2.7.16 Trinity/2.9.1-foss-2019b-Python-3.7.4

Other Versions

These versions of kallisto are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 12th October 2020