kinship2 1.8.5-foss-2020a-R-4.0.0

Routines to handle family data with a pedigree object (2014, ). The initial purpose was to create correlation structures that describe family relationships such as kinship and identity-by-descent, which can be used to model family data in mixed effects models, such as in the coxme function. Also includes a tool for pedigree drawing which is focused on producing compact layouts without intervention. Recent additions include utilities to trim the pedigree object with various criteria, and kinship for the X chromosome.

Accessing kinship2 1.8.5-foss-2020a-R-4.0.0

To load the module for kinship2 1.8.5-foss-2020a-R-4.0.0 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load kinship2/1.8.5-foss-2020a-R-4.0.0

BEAR Apps Version

2020a

Architectures

EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

Extensions

  • kinship2 1.8.5

More Information

For more information visit the kinship2 website.

Dependencies

This version of kinship2 has a direct dependency on: foss/2020a R/4.0.0-foss-2020a

Required By

This version of kinship2 is a direct dependent of: BEAR-R-bio/2020a-foss-2020a-R-4.0.0

Last modified on 4th July 2022