minimap2 2.24-GCCcore-11.2.0Minimap2 is a fast sequence mapping and alignment program that can find overlaps between long noisy reads, or map long reads or their assemblies to a reference genome optionally with detailed alignment (i.e. CIGAR). At present, it works efficiently with query sequences from a few kilobases to ~100 megabases in length at an error rate ~15%. Minimap2 outputs in the PAF or the SAM format. On limited test data sets, minimap2 is over 20 times faster than most other long-read aligners. It will replace BWA-MEM for long reads and contig alignment.
Accessing minimap2 2.24-GCCcore-11.2.0
To load the module for minimap2 2.24-GCCcore-11.2.0 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load minimap2/2.24-GCCcore-11.2.0
BEAR Apps Version
For more information visit the minimap2 website.
This version of minimap2 has a direct dependency on: GCCcore/11.2.0
This version of minimap2 is a direct dependent of: CIRI-long/1.1.0-foss-2021b ecc_finder/1.0.0_20221007_67d06f3-foss-2021b
These versions of minimap2 are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
|Version||BEAR Apps Version|
Last modified on 26th July 2022