BEAR Applications

ncbi-vdb 2.10.4-gompi-2019b

There is a newer version of ncbi-vdb

The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC Sequence Read Archives.

Accessing ncbi-vdb 2.10.4-gompi-2019b

To load the module for ncbi-vdb 2.10.4-gompi-2019b please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load ncbi-vdb/2.10.4-gompi-2019b

BEAR Apps Version

2020a

More Information

For more information visit the ncbi-vdb website.

Dependencies

This version of ncbi-vdb has a direct dependency on: file/5.38-GCCcore-8.3.0 gompi/2019b HDF5/1.10.5-gompi-2019b libxml2/2.9.9-GCCcore-8.3.0 NGS/2.10.4-GCCcore-8.3.0-Java-11

Required By

This version of ncbi-vdb is a direct dependent of: Centrifuge/1.0.4-beta-gompi-2019b HISAT2/2.2.1-foss-2019b SKESA/2.4.0-foss-2019b

Other Versions

These versions of ncbi-vdb are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 30th July 2020