rmats2sashimiplot 2.0.4-foss-2021a

rmats2sashimiplot produces a sashimiplot visualization of rMATS output. rmats2sashimiplot can also produce plots using an annotation file and genomic coordinates. The plotting backend is MISO.

Accessing rmats2sashimiplot 2.0.4-foss-2021a

To load the module for rmats2sashimiplot 2.0.4-foss-2021a please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load rmats2sashimiplot/2.0.4-foss-2021a

BEAR Apps Version

2020a

More Information

For more information visit the rmats2sashimiplot website.

Dependencies

This version of rmats2sashimiplot has a direct dependency on: BEDTools/2.30.0-GCC-10.3.0 foss/2021a matplotlib/3.4.2-foss-2021a Pysam/0.16.0.1-GCC-10.3.0 Python/3.9.5-GCCcore-10.3.0 SAMtools/1.12-GCC-10.3.0 SciPy-bundle/2021.05-foss-2021a

Last modified on 30th March 2022