scCATCH 2.1-foss-2020a-R-4.0.0

single cell Cluster-based Annotation Toolkit for Cellular Heterogeneity (scCATCH) from cluster marker genes identification to cluster annotation based on evidence-based score by matching the identified potential marker genes with known cell markers in tissue-specific cell taxonomy reference database (CellMatch).

Accessing scCATCH 2.1-foss-2020a-R-4.0.0

To load the module for scCATCH 2.1-foss-2020a-R-4.0.0 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load scCATCH/2.1-foss-2020a-R-4.0.0

BEAR Apps Version

2020a

Architectures

EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

Extensions

  • scCATCH 2.1

More Information

For more information visit the scCATCH website.

Dependencies

This version of scCATCH has a direct dependency on: foss/2020a R/4.0.0-foss-2020a Seurat/4.0.0-foss-2020a-R-4.0.0

Last modified on 21st April 2021