scCATCH 2.1-foss-2020a-R-4.0.0
single cell Cluster-based Annotation Toolkit for Cellular Heterogeneity (scCATCH) from cluster marker genes identification to cluster annotation based on evidence-based score by matching the identified potential marker genes with known cell markers in tissue-specific cell taxonomy reference database (CellMatch).Accessing scCATCH 2.1-foss-2020a-R-4.0.0
To load the module for scCATCH 2.1-foss-2020a-R-4.0.0 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):
📋
module load scCATCH/2.1-foss-2020a-R-4.0.0
BEAR Apps Version
Architectures
EL8-cascadelake — EL8-icelake — EL8-sapphirerapids
The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
Extensions
- scCATCH 2.1
More Information
For more information visit the scCATCH website.
Dependencies
This version of scCATCH has a direct dependency on: foss/2020a R/4.0.0-foss-2020a Seurat/4.0.0-foss-2020a-R-4.0.0
Last modified on 21st April 2021