sequenza 3.0.0-foss-2021b-MSc

There is a newer version of sequenza

Tools to analyze genomic sequencing data from paired normal-tumor samples, including cellularity and ploidy estimation; mutation and copy number (allele-specific and total copy number) detection, quantification and visualization.

Accessing sequenza 3.0.0-foss-2021b-MSc

To load the module for sequenza 3.0.0-foss-2021b-MSc please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load sequenza/3.0.0-foss-2021b-MSc

BEAR Apps Version

2020a

Extensions

  • copynumber 1.38.0
  • iotools-0.3-2
  • seqminer 8.4
  • sequenza 3.0.0
  • squash 1.0.9

More Information

For more information visit the sequenza website.

Dependencies

This version of sequenza has a direct dependency on: foss/2021b Pandoc/2.13 R/4.2.0-foss-2021b R-bundle-Bioconductor/3.16-foss-2021b-R-4.2.0

Required By

This version of sequenza is a direct dependent of: sequenza-utils/3.0.0-foss-2021b-MSc

Other Versions

These versions of sequenza are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 29th March 2023