BEAR Applications

AUGUSTUS 3.3.3-foss-2019b

AUGUSTUS is a program that predicts genes in eukaryotic genomic sequences

Accessing AUGUSTUS 3.3.3-foss-2019b

To load the module for AUGUSTUS 3.3.3-foss-2019b please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load AUGUSTUS/3.3.3-foss-2019b

BEAR Apps Version

2020b

More Information

For more information visit the AUGUSTUS website.

Dependencies

This version of AUGUSTUS has a direct dependency on: BamTools/2.5.1-GCC-8.3.0 BCFtools/1.10.2-GCC-8.3.0 Boost/1.71.0-gompi-2019b foss/2019b GSL/2.6-GCC-8.3.0 HTSlib/1.10.2-GCCcore-8.3.0 lpsolve/5.5.2.5-GCC-8.3.0 SAMtools/1.10-GCC-8.3.0 SQLite/3.29.0-GCCcore-8.3.0 SuiteSparse/5.6.0-foss-2019b-METIS-5.1.0 zlib/1.2.11-GCCcore-8.3.0

Required By

This version of AUGUSTUS is a direct dependent of: BUSCO/4.0.5-foss-2019b-Python-3.7.4 funannotate/1.8.1-foss-2019b-Python-2.7.16 funannotate/1.8.1-foss-2019b-Python-3.7.4

Other Versions

These versions of AUGUSTUS are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 12th October 2020